MiniMUGA Sample Report - Initial Version |
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MMRRC Strain Name | C57BL/6J-Tg(GFAP-CHRM3*)6Kdmc/Mmnc | ||||||||||||||||||||||||||||||||||||||||||||||||||
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MMRRC Strain ID | 42286 | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sample ID | DB0038 | ||||||||||||||||||||||||||||||||||||||||||||||||||
Genotyping Quality |
Excellent (1 N calls)
All reported results are dependent on genotyping quality. |
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Chromosomal Sex | XY | ||||||||||||||||||||||||||||||||||||||||||||||||||
Genome Analysis |
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Constructs Detected |
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Backgrounds Detected
(Diagnostic Alleles) |
Minimal Strain Sets Explaining All Diagnostic Classes (Number of Markers Explained):
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Strain Reproducibility |
Strain Reproducibility Samples: DB0038, EM0574
Inbreeding Level: 100.0% Y Chromosome: Host Congenicity Level: 100.0% Donor Contribution in Linked Interval: 0.0Mb |
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Notes |
Genetic QC analysis (GQC) was performed on representative samples from the donor submission and provides a baseline reference. Regardless of the material ordered (live mice, sperm, embryos, resuscitated animals), the provided material is guaranteed to contain the primary genetic alteration of interest; however, the composition of the genetic background may vary (See Reproducibility sections of the report for details). The impact of genetic background on previously reported phenotypes has not been evaluated.
GQC analysis was done on two XY samples EM0574 and DB0038 at the time of importation and the conclusions are consistent in all samples. The results of the analysis are congruent with the SDS and DB0038 is the representative sample selected for the report. The background is C57BL/6J
and there is no evidence of a secondary background. The mitochondrial and Y genomes are consistent with C57BL/6J. None of the constructs detectable by MUGA are present.
The genome of the MMRRC: 42286 strain is 100 % inbred and 100% congenic at the strain level. The level of congenicity estimated by miniMUGA is consistent with the number of backcross generations reported in the SDS (10 generations). |
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Special Considerations | A request has been made to update the strain name from C57BL/6J-Tg(GFAP-CHRM3*)6Kdmc/Mmnc to C57BL/6J (Cg)-Tg(GFAP-CHRM3*)6Kdmc/Mmnc (March 3, 2023). | ||||||||||||||||||||||||||||||||||||||||||||||||||
Diplotype Intervals |